| RGAP LOCUS ID |
LOC_Os12g44310 |
| RAP-DB ID |
Os12g0640600 |
| Function |
carotenoid cleavage dioxygenase, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
8 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
3.099 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.04 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
36 |
| confidence value |
0.08 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsCCD1 |
| Function assigned as per literature |
|
| Subcellular localization as per literature |
NA |
| Cells used for localization experiment |
|
| NUCLEAR or Not Nuclear |
|
| PMID |
|
| Reference of localization |
|
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
3 |
| Number of Bipartite |
0 |
| Basic residues % |
0.113 |
| NLS score |
0.81 |
| Protein Sequence |
>LOC_Os12g44310.1 protein
MGGGDGDEVLLLPEPRPRRGLASWALDLLERAAVRLGHDASKPLYWLSGNFAPVHHETPPAPALPVRGHLPECLNGEFVRVGPNPKFVPVAGYHWFDGDG
MIHAMRIKDGKATYVSRYVKTSRLKQEEYFGGAKFMKIGDLKGFYGLFMVQMQQLRKKLKVLDFTYGHGTANTALIYHHGKLMALSEADKPCKFSSHNDV
VKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTDEMFAFGYSHEPPYCTYRVITKDGAMLDPVPITIPESVMMHDFAITENYSIFMDLPLLFRPKEMV
KNGEFIYKFDPTKKARFGILQRYEKDDTNIRWFELPNCFIFHNANAWEEGDEVILITCRLENPDLDKVNGYQSDNLENFGNELYEMRFNMKTGAASQKQL
SVSAVDFPRINESYTGRKQRYVYCAILNSIAKVAGIIKFDLHAEPEISGMKQLEVGGNVRGIFDLGPGRFGSEAIFVPREPGVSGEEDDGYLIFFVHDEN
TGKSEVNVIDAKTMSADPVAVVELPSRVPYGFHAFFINEEQLAKQSA |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cellular_component |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
catabolic process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
lipid metabolic process |
|
| 9 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytoplasm |
|
| 10 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
vacuole |
|
| 11 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 12 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| Presence of Splice variants |
YES |
