LOC_Os12g44100

Expression Profile

RGAP LOCUS ID LOC_Os12g44100
RAP-DB ID Os12g0638200
Function peptide transporter PTR2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization E.R.
score 5

2) CELLO Prediction
localization PlasmaMembrane
score 4.121

3) NUCPRED Prediction
localization Non Nuclear
score 0.28

4) Y-Loc Prediction
localization Cytoplasm
score 88
confidence value 0.61
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNPF2.2
Function assigned as per literature OsNPF2.2 can unload nitrate from the xylem to affect the root-to-shoot nitrate transport and plant development.
Subcellular localization as per literature plasma membrane
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25923512
Reference of localization https://www.nature.com/articles/srep09635
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.077
NLS score -0.16
Protein Sequence >LOC_Os12g44100.1 protein
MPPAPSQEQTKLAPEKQQHISGHGEQAVRYHGWKVMPYVIGNETCERLGTIGTTANLLVYLTTVFHIPSAAAATLLNVFSGTSNLAPLLGAFLCDAYLGR
YATLAAASIASFLGMLVLTLTAAIPSLHPPPCASSSSTSCQGPTHRQLAALLASFAFLVVGAGGIRPCNLAFGADQFDPATAAGRRGIASFFNWYYFTFT
IAMMVSATLIIYLQSNINWAIGLAVPTALMALSCALFFMGTRLYVRVRPEGSPFTSFAQVLVAAARKRRLPAPASPADDLFDPPHRSKLVAKIKHTDQFR
WLDKAAVVTAEDAVVDGMSAAAANPWRLCTVQQVEEVKVLARMIPVWSSSIVYYVMLTQLGTYTVFQVMQSDRRVGRSGFEVPAGSMVVFNMVALTAWLP
VYDRAVVPALRRVTGREEGISQLQRIGIGLALSVATMAVAVAVEQRRRGAGGGSSSSWAWMVPQQAMAGLSEAFAAIGLNELCYKESPESMRSVAGALSP
LALAVASYASGAMVTAVERATGWLAQDIDKGRVDLFYLVVGAMSAANLAYFVVCALWYRSKNIADHGGVELLQTSSKHNADAPPAMAV

GO Analysis
1
GO Category Molecular Function
GO Term transporter activity
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Biological Process
GO Term transport
4
GO Category Biological Process
GO Term cellular process
5
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No