LOC_Os12g43550

Expression Profile

RGAP LOCUS ID LOC_Os12g43550
RAP-DB ID Os12g0631100
Function ras-related protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Chloroplast
score 0.935

3) NUCPRED Prediction
localization Non Nuclear
score 0.05

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.36
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRab5a|gpa1|glup4
Function assigned as per literature OsRab5a plays an essential role in trafficking of storage protein to PBII
Subcellular localization as per literature PVC and Golgi
Cells used for localization experiment Arabidopsis protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 21105928
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2010.04370.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.096
NLS score -0.47
Protein Sequence >LOC_Os12g43550.1 protein
MAANPGNKIRNAKLVLLGDVGTGKSSLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAASFT
RAKKWVQELQAQGNPNTIMALAGNKADMVEARQVPAEEAKTYAQENGLFFMETSAKTAINVNDVFHEIGEFRSQIISAVDFCTPTELVGYLVYKNVHSLL
LLISKRICILNLISAKRLLQGQQAQDTPAGMVLNQRPAERMVSSSSCCS

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term endosome
2
GO Category Molecular Function
GO Term protein binding
3
GO Category Biological Process
GO Term signal transduction
4
GO Category Molecular Function
GO Term nucleotide binding
5
GO Category Biological Process
GO Term transport
6
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants YES