LOC_Os12g43440

Expression Profile

RGAP LOCUS ID LOC_Os12g43440
RAP-DB ID Os12g0630100
Function thaumatin, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Extracellular
score 4.391

3) NUCPRED Prediction
localization Non Nuclear
score 0.02

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.99
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) TOND1
Function assigned as per literature TOND1 confers tolerance to N deficiency in TOND1‐deficient rice cultivars
Subcellular localization as per literature plasma membran
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25439309
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.12736
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.066
NLS score -0.47
Protein Sequence >LOC_Os12g43440.1 protein
MASAPAASSAVLLVVVLVASLAAGGANAATFTITNRCSFTVWPAATPVGGGTQLNPGQTWTINVPAGTSSGRVWGRTGCSFDGAGRGRCATGDCGGALSC
RLSGQPPLTLAEFTLGTSGGNRDFYNLSVIDGYNVAMSFSCSSGVTLTCRERSCPDAYQYPSDDSKLRSCNGNSNYRVVFCP

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term extracellular region
2
GO Category Biological Process
GO Term response to stress
3
GO Category Biological Process
GO Term response to biotic stimulus
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Cellular comBiological Processonent
GO Term vacuole
6
GO Category Molecular Function
GO Term molecular_function
7
GO Category Biological Process
GO Term biological_process
8
GO Category Cellular comBiological Processonent
GO Term cell wall
9
GO Category Molecular Function
GO Term protein binding
10
GO Category Biological Process
GO Term biosynthetic process
11
GO Category Biological Process
GO Term cellular process
12
GO Category Biological Process
GO Term secondary metabolic process
Presence of Splice variants No