LOC_Os12g42550

Expression Profile

RGAP LOCUS ID LOC_Os12g42550
RAP-DB ID Os12g0620400
Function methyl-CpG binding domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 2.5

3) NUCPRED Prediction
localization Non Nuclear
score 0.57

4) Y-Loc Prediction
localization Nuclear
score 99.36
confidence value 0.99
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMeCP 
Function assigned as per literature acts as a negative regulator of silicon, and can mediate the repression of the transcription from Os10g0167600, which inhibits the photoreactivation of the photolyase involved in the repair of CPDs
Subcellular localization as per literature Nucleus
Cells used for localization experiment rice protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 27694845
Reference of localization https://www.nature.com/articles/srep34569#f5
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.132
NLS score -0.04
Protein Sequence >LOC_Os12g42550.1 protein
MATAGDEQQQQAAAAQTAEVTEAAAKEVVSVEMPAPEGWTKKFTPQRGGRFEIVFVSPTGEEIKNKRQLSQYLKAHPGGPASSEFDWGTGDTPRRSARIS
EKVKAFDSPEGEKIPKRSRNSSGRKGKQEKKEATENEEAKDAEADKEAPSEDAPKETDVETKPAEEAKEAPSEDAPKDTDVEMKTAEDASKTADADTPAP
APAGTEKEDAKPAESEAAPPAPSEGGEKKEDAKPAEPEAAAAPPSNPTEPSAPKAAAAAPVENSADKGPHQDSQPPSAAAPAKESSPVNNGQLPAGASAV
KCT

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biological_process
4
GO Category Molecular Function
GO Term nucleotide binding
Presence of Splice variants YES