LOC_Os12g42420

Expression Profile

RGAP LOCUS ID LOC_Os12g42420
RAP-DB ID Os12g0618800
Function DNA binding protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization PlasmaMembrane
score 2.005

3) NUCPRED Prediction
localization Nuclear
score 0.8

4) Y-Loc Prediction
localization Cytoplasm
score 44
confidence value 0.04
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPLS3|OsGCNT
Function assigned as per literature OsPLS3 is a DUF266-containing gene that plays an important role in the onset of leaf senescence, in part through cytokinin and ethylene signaling in rice.
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 30117035
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-018-0758-1
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 3
Number of Bipartite 1
Basic residues % 0.121
NLS score 2.21
Protein Sequence >LOC_Os12g42420.1 protein
MALPHAASPYVLSLLLLLSIPAVFLLAPRLLPPKTLPSIPDADETDDLALFRRAVLLSAAPDSSSASAGAASLFGRRPQPKVAFLFLTNSDLVFSPLWEK
YFAGNHHLLNLYIHADPSAAVDLPATASFRGHVIRGTKATARASATLISAARRLLATALLDDPSNHFFALLSQSCIPLHPFPTFYRTLLSDSDNNGGSPR
RPRRRRSFIEILDNEPTLHDRYYARGDDVMLPEVPYDSFRVGSQFFVLVRRHAVMVVRDRRLWNKFKLPCLTKRKDSCYPEEHYFPTLLDMQDPQGCTKF
TLTRVNWTDSVDGHPHTYRPDEVSGELIRELRKSNGTHSYMFARKFAPDCLKPLMEIADSVILRD

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Molecular Function
GO Term molecular_function
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No