| RGAP LOCUS ID |
LOC_Os12g41680 |
| RAP-DB ID |
Os12g0610600 |
| Function |
No apical meristem protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
12 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
2.841 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.42 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
34.29 |
| confidence value |
0.02 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
NAC |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OMTN3|OsNAC60 |
| Function assigned as per literature |
OMTN3 confers a negative regulatory role in drought resistance |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Rice protoplast |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
24604734 |
| Reference of localization |
https://academic.oup.com/jxb/article/65/8/2119/434680 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
1 |
| Number of Bipartite |
1 |
| Basic residues % |
0.105 |
| NLS score |
0.45 |
| Protein Sequence |
>LOC_Os12g41680.1 protein
MSMMSFLSMVEAELPPGFRFHPRDDELICDYLAPKVAGKVGFSGRRPPMVDVDLNKVEPWDLPEVASVGGKEWYFFSLRDRKYATGQRTNRATVSGYWKA
TGKDRVVARRGALVGMRKTLVFYQGRAPKGRKTEWVMHEYRMEGVHDQQASSFSSKEDWVLCRVICKRKSGGGATSKSRSLTTTTTTIVHDTSTPTSSPP
LPPLMDTTLAQLQASMNTSSSSAIAAVAALEQVPCFSSFSNSIASNNNNSNSATVNAQQCYLPIVTGSNNNGMSYLDHGLPEFGSFLDTQSCDKKMLKAV
LSQLNSIGGEVLPGLPPPSEMAAAVSSSWMNHF |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
anatomical structure morphogenesis |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
embryo development |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
No |
