| RGAP LOCUS ID |
LOC_Os12g39400 |
| RAP-DB ID |
Os12g0583700 |
| Function |
ZOS12-09 - C2H2 zinc finger protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
11 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.913 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.45 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
99.9 |
| confidence value |
0.89 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
C2H2 |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
ZFP252|RZF71 |
| Function assigned as per literature |
RZF71 may play an important role in rice responses to salt and osmotic stresses as a transcription factor |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Onion epidermal cell |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
17548332 |
| Reference of localization |
http://europepmc.org/abstract/med/17548332 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
4 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.117 |
| NLS score |
0.65 |
| Protein Sequence |
>LOC_Os12g39400.1 protein
MAVEAVLEASRSSSEEEAEVIVTHGGGGGGGGGGGQVEGWGKRKRSRRRRPQLPPSEEEYLALCLLMLARGRRDGDDVAASASAAAAAVEHRCSVCGKAF
ASYQALGGHKASHRKPPPPAMVDDDEVVVETKPAAIATPSSSASGVSGGGGGRAHECNVCGKAFPTGQALGGHKRCHYDGTIGSAAGAGASKPAAKTTVA
VAASRGFDLNLPALPDVAAAADQRCAAEDDEVLSPLAFKKPRLMIPA |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
nucleic acid binding |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| 11 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
No |
