LOC_Os12g38460

Expression Profile

RGAP LOCUS ID LOC_Os12g38460
RAP-DB ID Os12g0572800
Function RNA recognition motif family protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 2.744

3) NUCPRED Prediction
localization Non Nuclear
score 0.72

4) Y-Loc Prediction
localization Nuclear
score 96.71
confidence value 0.5
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) MEL2
Function assigned as per literature MEL2 plays an essential role in premeiotic cell-cycle control
Subcellular localization as per literature Perinucleus of premeiotic meiocytes
Cells used for localization experiment Anthers of transgenic rice plants
NUCLEAR or Not Nuclear NUCLEAR
PMID 21253568
Reference of localization http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1001265#pgen-1001265-g007
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.134
NLS score 0.09
Protein Sequence >LOC_Os12g38460.1 protein
MDRAKAAAREDKAAAAATGKETAVSRAVAEDDTALLLAAVGSFRKEAMGRLRKGSDASRMLDQEMSTRLLHLACKHDAVQCARLLLEGGHGITASPVDAR
DQLTRTPLQVAAEAHSARCIELLLSKNARTDLKLVDGRPLVALEIALLSRRAQVKWSLDNSIEDLLSSLQEKDLNAVRLLAEKTREVGEVAYRYAMEGRV
TVLAMLLLVAEEKISAPVSVVIEGVRTKKSIYYSIVDEALSIGDAPARDSNERRKALLSEIQLLNQFGAALWRDRNIDKRSLPPLLKAAKVGDVNVTKML
LMGDVDVNEADPEGNTALHWCLSGSSSTQEPRIVWLLLKNGARVFQGNKLGLTPVHSAAAKGNYKALQSLLLHAQDCVDTPSKTKETPLFLAVKNGSLDC
VKLLLRSGASTKVQNLRKQRPIDVATSQDMRFILTSANVAPWNRSSHPKKSVTNKESCKEFLEDFGDYDSDDLNESFTGLKTSASHRDFRSSNGSAQGGK
SKNHCAPKQGSKFVPRPNHWPKHDYTRKIFVGGLPPSVGAEYLTEFFTAEFGPVEEAVVIGIRMGDRVQSRGFGFVKFKREEDVISAKETHHVYMLGKRV
EVKDAVARGSLPAEIQKIAPFRHHSQEVPKVTHHLLDGELKEEHYIRKRRPLPEKCLPSWFFIFRKWLPGFLADATERLGDRYPLSSLKGDFRAICRMEL
DHGTLGYPKLSDFMRSLPGICRMCVVPVGSGPATHMVLLPPVSRPKYVPLLEPFSFDHDELPESVSDHQSPRSPLTTNITEDSPHNTDSQQGDTCSESNV
QSHQGDECCGSNTESQQDSASTDNGSLLGEVTVSTPKPDSIESIPTGKSDLIELVPTRKPHLIDTVTTRKPDLIVTEPTRKPIVIEPVPTRKPSVIEPVP
TRKPMAIEPVVPTRKPIVIEPVPTRKPIVIEPVPTRKPIVTEPLPTRKPTVIEPASLTQKIVSEPMRKTDLFESGLARRIGLIGSRPTTCFVDCPVERPA
VTPSNCEADMRFSFFQSQWDRFLAPYPKSDYCIICRSYDAVMQLVPCLHKICVACMMRCNVRACMTCGTAGVMERASDQRCQLMVVCRGAEAIVRCSPCM
HSIACRGCFLASVTLLKGCTTCGCMIEHFKFC

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No