LOC_Os12g38400

Expression Profile

RGAP LOCUS ID LOC_Os12g38400
RAP-DB ID Os12g0572000
Function MYB family transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 7

2) CELLO Prediction
localization Nuclear
score 2.178

3) NUCPRED Prediction
localization Non Nuclear
score 0.63

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.99
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category MYB

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMYB91
Function assigned as per literature OsMYB91 was a stress-responsive gene that might be involved in coordinating rice tolerance to abiotic stress and plant growth by regulating SLR1 expression
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 26025528
Reference of localization https://www.sciencedirect.com/science/article/pii/S016894521500093X?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 2
Basic residues % 0.19
NLS score 0.51
Protein Sequence >LOC_Os12g38400.2 protein
MQPPPMRERQRWRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKR
LGKWWEVFKEKQQRELRDRDRRRLPPPLDGDERGCAGGRYDWLLEDFADKLVNDHHRRMMAAPILPPWMSSSPSSSSSPSVTLSLASAAVAPAPAAPPPT
WGGGGGGEVVVAELMECCREMEEGQRAWAAHRKEAAWRMKRVEMQLETERACRRREATEEFEAKMRALREEQAAAVERVEAEYREKMAGLRRDAEAKEQK
MAEQWAAKHARLAKFLDQVAACRRWPPVEINGGGGGGPGGGR

GO Analysis
1
GO Category Biological Process
GO Term response to endogenous stimulus
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term response to stress
6
GO Category Biological Process
GO Term response to biotic stimulus
7
GO Category Biological Process
GO Term anatomical structure morphogenesis
8
GO Category Biological Process
GO Term multicellular organismal development
9
GO Category Cellular comBiological Processonent
GO Term nucleolus
10
GO Category Molecular Function
GO Term protein binding
11
GO Category Biological Process
GO Term response to abiotic stimulus
12
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
13
GO Category Cellular comBiological Processonent
GO Term intracellular
14
GO Category Cellular comBiological Processonent
GO Term nucleus
15
GO Category Biological Process
GO Term cellular process
16
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No