LOC_Os12g38380

Expression Profile

RGAP LOCUS ID LOC_Os12g38380
RAP-DB ID Os12g0571900
Function tetratricopeptide repeat containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Nuclear
score 1.667

3) NUCPRED Prediction
localization Nuclear
score 0.89

4) Y-Loc Prediction
localization Cytoplasm
score 92
confidence value 0.88
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCstF77
Function assigned as per literature
Subcellular localization as per literature Nucleus
Cells used for localization experiment N. benthamiana leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 19561057
Reference of localization https://academic.oup.com/pcp/article/50/8/1479/1814026
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.13
NLS score -0.04
Protein Sequence >LOC_Os12g38380.1 protein
MDIYNVEAAEILANEAQLLPIGEAAPIYEKLLSTFPTAAKYWKQYVEAYMSAKDDEATKQIFSRCLLSCLQINLWRCYINFIRRVNDKRGSDGLEETKKA
FDFMLNYVGNDVASGPVWMDYIAFLKSMPVVTPQEESHRMTTVRKVYQKAILVPTNHVEQLWKDYENFENSVSRTLAKGLLSEYQPKFNSAKAVYRERKK
YIDDIDWNMLAVPPTGSYKEEQQCMAWKRLLAFEKGNPQRIDATTANRRVTFTFEQCLMYLYHHPDIWYDYAMWHAKNGSVDSAIKIFQRAVKALPDSGV
LKYAFAELEESRGAIQPAKAIYESLIAENAGMTSLAHIQFIRFLRRTEGIEAARKYFLDARKLPGCTYHVYVAYATMAFCLDKDAKVAQSVFEAGLKRFM
HEPGYILEYADFLCRLNDDRNVRALFERALSLLPPEESIEVWKRFAQFEQTYGDLSSMLKVEQRRKEALSRTSEDALSALENTLYDVVSRYSYMDLWPCS
TKELDYLSRHEWLAKNIANRGDKSVVLTGGATLGDIRVGSNKKSFPQSSKVVRPEISRMVIYDPRQMKGPDFSTTASGYTKEIDEILKRLSPQMMSFITN
LPAIEGPSPDMDIVLSVLMQSTLPVGDKPGSQVPGPATSDLSGPGKSGLNQNGSIHRPPRDGQPTKRKNSERGRAQEEDDTSTTVQSRAMPRDIFRLRQI
QRNRGLGPSQSGSAALSSGSVFSGDQSASSG

GO Analysis
1
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Molecular Function
GO Term RNA binding
4
GO Category Cellular comBiological Processonent
GO Term nucleus
5
GO Category Cellular comBiological Processonent
GO Term intracellular
6
GO Category Molecular Function
GO Term protein binding
7
GO Category Biological Process
GO Term multicellular organismal development
Presence of Splice variants No