LOC_Os12g38170

Expression Profile

RGAP LOCUS ID LOC_Os12g38170
RAP-DB ID Os12g0569500
Function osmotin, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization extr
score 13

2) CELLO Prediction
localization Extracellular
score 1.46

3) NUCPRED Prediction
localization Non Nuclear
score 0.01

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.99
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsOSM1
Function assigned as per literature OsOSM1 plays an important role in defense against rice SB disease
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment tobacco leaf epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 30686242
Reference of localization https://apsjournals.apsnet.org/doi/10.1094/PDIS-11-15-1372-RE
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.069
NLS score -0.47
Protein Sequence >LOC_Os12g38170.1 protein
MANKLQLAIAFVVVVVVLGAMAASAAAAVAPMLTMHNLCPYTVWPIVSPDSGSPPIADGIRLEGRGVGLRSLNLPAGFWSGRVVPRTWCRDGGRCDTGNA
PPATVVRLSFNGAGGLAEYSVNLGEGFNVPTVVSPHAIGGGMCPALGCTADLNAGCAAGQRVYGGDTGGDVVACRGPASYFKQRCPLTRTGGGDVEPVPQ
HCISPGEIKLVFCQAAMVAGEPELIRTVDVADN

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cell wall
3
GO Category Cellular comBiological Processonent
GO Term cellular_component
4
GO Category Biological Process
GO Term response to biotic stimulus
Presence of Splice variants No