LOC_Os12g38051

Expression Profile

RGAP LOCUS ID LOC_Os12g38051
RAP-DB ID Os12g0568200
Function metallothionein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9

2) CELLO Prediction
localization Nuclear
score 2.09

3) NUCPRED Prediction
localization Non Nuclear
score 0.01

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.87
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMT-I-4b|OsMT1c
Function assigned as per literature OsMT-I-4b are involved in tapetum degeneration
Subcellular localization as per literature OsMT-I-4b colocalizes with DTC1 in cytoplasm
Cells used for localization experiment protoplasts prepared from rice Oc cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26697896
Reference of localization http://www.plantphysiol.org/content/170/3/1611
Is Subcellular localization evidence by author available ? Yes
Image

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.063
NLS score -0.47
Protein Sequence >LOC_Os12g38051.1 protein
MSCGGSCNCGSCGCGGGCGKMYPDLAEKITTTTTTATTVLGVAPEKGHFEVMVGKAAESGEAAHGCSCGSSCKCNPCNC

GO Analysis
1
GO Category Biological Process
GO Term cellular homeostasis
2
GO Category Molecular Function
GO Term binding
Presence of Splice variants No