LOC_Os12g37870

Expression Profile

RGAP LOCUS ID LOC_Os12g37870
RAP-DB ID Os12g0566300
Function ATP-grasp domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Cytoplasmic
score 2.045

3) NUCPRED Prediction
localization Non Nuclear
score 0.12

4) Y-Loc Prediction
localization Nuclear
score 32.38
confidence value 0.04
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SPL30|OsACL-A2
Function assigned as per literature OsACL-A2 negatively regulates innate immune responses in rice.
Subcellular localization as per literature nucleus and cytoplasm
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 30582769
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/pbi.13058
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.116
NLS score -0.13
Protein Sequence >LOC_Os12g37870.1 protein
MARKKIREYDSKRLLREHLKRLAAIDLHILSAQVTESTDFTELVNQEPWLSSMKLVVKPDMLFGKRGKSGLVALNLDLAQVRQFVKERLGVEVEMGGCKA
PITTFIVEPFVPHDQEYYLSIVSERLGSTISFSECGGIEIEENWDKVKTVFLPTEKAMTPDACAPLIATLPLEVRTKIGDFIRGVYSVFQDLDFSFLEMN
PFTMVNGEPYPLDMRGELDDTAAFKNFKKWGNIQFPLPFGRVLSPSESFIHELDEKTSSSLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
YAEYSGAPNEEEVLQYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRALREKESKLKAARMNIYVRRGGPNYQTGLAKMRTLGAELGVPIE
VYGPEATMTGICKQAIDCIMAEA

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term transferase activity
4
GO Category Biological Process
GO Term metabolic process
5
GO Category Cellular comBiological Processonent
GO Term cytosol
6
GO Category Cellular comBiological Processonent
GO Term cytoplasm
Presence of Splice variants No