LOC_Os12g37840

Expression Profile

RGAP LOCUS ID LOC_Os12g37840
RAP-DB ID Os12g0566000
Function boron transporter protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 13

2) CELLO Prediction
localization PlasmaMembrane
score 4.829

3) NUCPRED Prediction
localization Non Nuclear
score 0.2

4) Y-Loc Prediction
localization Cytoplasm
score 64
confidence value 0.21
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsBOR1
Function assigned as per literature OsBOR1 is required for efficient Boron uptake and for xylem loading of Boron
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 17675406
Reference of localization http://www.plantcell.org/content/19/8/2624.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.096
NLS score -0.13
Protein Sequence >LOC_Os12g37840.1 protein
MEESFVPLRGIKNDLHGRLQCYKQDWTGGFRAGIRILAPTTYIFFASAIPVISFGEQLERNTDGVLTAVQTLASTALCGIIHSFLGGQPLLILGVAEPTV
LMYTFMFNFAKDRPDLGRRLFLAWTGWVCVWTAILLFLLAILGACSIINRFTRIAGELFGLLIAMLFMQQAIKGLVDEFRIPERENRKALEFVSSWRFAN
GMFAIVLSFGLLLTALRSRKARSWRYGTGWLRGFIADYGVPLMVLVWTGVSYIPYGSVPKGIPRRLFSPNPWSPGAYDNWTVIRDMPNVPLLYIIGAFIP
ATMIAVLYYFDHSVASQLAQQKEFNLRKPPSFHYDLLLLGFLTLLCGLIGIPPANGVIPQSPMHTKSLATLKHQLLRNRLVATARQSMSQNASLSQLYGS
MQEAYQQMQTPLIYQQPSVKGLNELKDSTVQMASSMGNIDAPVDETVFDIEKEIDDLLPIEVKEQRLSNLLQATMVGGCVAAMPLLKKIPTSVLWGYFAF
MAIESLPGNQFWERILLLFTAPSRRYKVLEEYHTTFVETVPFKTIAMFTLFQTMYLLVCFGITWIPIAGVLFPLMIMLLVPVRQYILPKLFKGAHLTDLD
AAEYEESPAIPFIAAQDIDVALARTQSAEILDDIVTRSRGEIKRLNSPKITSSGGTPVAELKGIRSPCISERAYSPCITELRHDRSPLGGRGSPRTGETR
SSKLGEGSTPK

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Cellular comBiological Processonent
GO Term cytoplasm
4
GO Category Biological Process
GO Term biological_process
5
GO Category Cellular comBiological Processonent
GO Term vacuole
6
GO Category Molecular Function
GO Term transporter activity
7
GO Category Cellular comBiological Processonent
GO Term endosome
8
GO Category Cellular comBiological Processonent
GO Term extracellular region
9
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants YES