LOC_Os12g37610

Expression Profile

RGAP LOCUS ID LOC_Os12g37610
RAP-DB ID Os12g0563200
Function ribosomal protein S6, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Nuclear
score 1.89

3) NUCPRED Prediction
localization Non Nuclear
score 0.65

4) Y-Loc Prediction
localization Nuclear
score 98.87
confidence value 0.76
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) TCD11
Function assigned as per literature TCD11 plays an important role in chloroplast development at low temperature
Subcellular localization as per literature chloroplast
Cells used for localization experiment (Nicotiana tabacum) leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28483049
Reference of localization https://www.sciencedirect.com/science/article/pii/S0168945216304708?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.17
NLS score -0.16
Protein Sequence >LOC_Os12g37610.1 protein
MEATAAPRPLSLLARQPQPQPQQLRLRLQRVAAFTGVGGGGRRLMVAAAAKKRRGKGGEGEEEEERVDTHSFAPKAGEATGPFPEAVLLRKKMVKDDGQV
APEFADADEEKLYEFLNIQMESDLNLKRMRHYEVVYLIHEDRVEEVEDVVSKVQDFVREKKGRIWRLNNWGLRRLAYKIKKARHANYILMNFEIQAKYIN
DFKTLLDKDERIIRHLVMKRDEAITEDCSPPPEFHTLRAQQQYMDDEYIDDEDDGKEEQEPEEDWDDKGEMENAGYEDDDEPEIILVDEVERDNNENIRR
RNRTMKVEKYAAEKVLR

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term ribosome
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term translation
4
GO Category Molecular Function
GO Term structural molecule activity
5
GO Category Molecular Function
GO Term RNA binding
6
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No