LOC_Os12g37410

Expression Profile

RGAP LOCUS ID LOC_Os12g37410
RAP-DB ID Os12g0560900
Function CPuORF5 - conserved peptide uORF-containing transcript, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 10

2) CELLO Prediction
localization Nuclear
score 2.669

3) NUCPRED Prediction
localization Non Nuclear
score 0.51

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.98
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category bZIP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsOBF1|OsbZIP87
Function assigned as per literature A LIP19-interacting proteininvolved in cold signalling in rice plants
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion epidermal cells.
NUCLEAR or Not Nuclear NUCLEAR
PMID 16051676
Reference of localization https://academic.oup.com/pcp/article/46/10/1623/1904223
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 3
Basic residues % 0.145
NLS score 1.01
Protein Sequence >LOC_Os12g37410.1 protein
MSSSSLSPAGSSDGDSAGVVVAADHRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVLARASEIAGQYARVEQENTVLRARAAELGDRLRS
VNEVLRVVEEFSGVAMDIQEECPPDDPLLRPWQIPCPAAAHMLQY

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Molecular Function
GO Term protein binding
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No