LOC_Os12g36194

Expression Profile

RGAP LOCUS ID LOC_Os12g36194
RAP-DB ID Os12g0548300
Function nucleoside diphosphate kinase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Chloroplast
score 3.159

3) NUCPRED Prediction
localization Non Nuclear
score 0.02

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.82
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNDPK2|WSL12|YSS2
Function assigned as per literature OsNDPK2 is a ubiquitous enzyme that catalyzes the transfer of the γ-phosphoryl group from a nucleoside triphosphate to a nucleoside diphosphate
Subcellular localization as per literature plastid and mitochondria
Cells used for localization experiment onion epidermal cells and rice protoplast
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 21897044
Reference of localization https://www.tandfonline.com/doi/pdf/10.1271/bbb.110285?needAccess=true
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.127
NLS score -0.47
Protein Sequence >LOC_Os12g36194.1 protein
MDAMAVLARTSRPAPTLLAATSPAVSRRPAAVSFAAAASPGSRGRVALSAAWGGRAARGRVSAAGRIVASSVEQSYIMIKPDGVQRGLVGEIISRFEKKG
FVLKGLKLFQCPKDLAQEHYKDLKEKPFFPGLIEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIAL
WFKEGELCEWESVLTPWLVE

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Molecular Function
GO Term nucleotide binding
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term response to abiotic stimulus
7
GO Category Biological Process
GO Term response to endogenous stimulus
8
GO Category Biological Process
GO Term signal transduction
9
GO Category Biological Process
GO Term response to stress
10
GO Category Molecular Function
GO Term kinase activity
11
GO Category Cellular comBiological Processonent
GO Term thylakoid
12
GO Category Cellular comBiological Processonent
GO Term cytoplasm
13
GO Category Biological Process
GO Term response to external stimulus
14
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No