LOC_Os12g35320

Expression Profile

RGAP LOCUS ID LOC_Os12g35320
RAP-DB ID Os12g0538500
Function RING finger and CHY zinc finger domain-containing protein 1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 12

2) CELLO Prediction
localization Extracellular
score 3.265

3) NUCPRED Prediction
localization Non Nuclear
score 0.09

4) Y-Loc Prediction
localization Nuclear
score 60.38
confidence value 0.29
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SDEL1
Function assigned as per literature SDEL1 facilitates the degradation of SPX4 to modulate PHR2 activity and regulate Pi homeostasis and Pi signaling in response to external Pi availability in rice
Subcellular localization as per literature cytoplasm and nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 31002982
Reference of localization https://www.cell.com/molecular-plant/pdf/S1674-2052(19)30132-7.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.092
NLS score -0.47
Protein Sequence >LOC_Os12g35320.1 protein
MGGAHFPGEGEVVAGEGDAVVPLRDVGKMEHGCEHYRRRCKIVAPCCGEVFACRHCHNDATASGDRHTICRQDVEKVVCLLCDTEQPVSQVCINCGVNMG
EYFCDVCKFYDDDTEKGQFHCYDCGICRVGGKENYFHCAKCGSCYAVALRDNHQCVENSMRQNCPICYEYLFDSLKGTRVLDCGHTMHMECFSEMVEHNK
YTCPICSKTALDMTHHWALLDQEIEATIMPPVYRYKVWVLCNDCNKVSEVDFHVIGHKCSHCNSYNTRSTSRPADLSGSSSPSTSDSSENNP

GO Analysis
1
GO Category Molecular Function
GO Term binding
Presence of Splice variants No