LOC_Os12g34850

Expression Profile

RGAP LOCUS ID LOC_Os12g34850
RAP-DB ID Os12g0533500
Function Fibronectin type III domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 3.42

3) NUCPRED Prediction
localization Non Nuclear
score 0.65

4) Y-Loc Prediction
localization Nuclear
score 89.06
confidence value 0.4
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsVIL2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.124
NLS score 0.04
Protein Sequence >LOC_Os12g34850.1 protein
MASSAGGDPPPPGLFAAALHACSGASALEEHIHADDSNTISDNTLEQLGFLDQESNDASVNTEKIQSSTPKCKSVEDIPIAPAAKRCKNMDSKKLVPNSN
NNSCLTGSQAPRKLPRKGDYPVQLRRNETFQDTKPPSTWICKNAACKAVLTADNTFCKRCSCCICHLFDDNKDPSLWLVCSSETGDRDCCESSCHIECAL
QHQKVGCVDLGQSIQLDGNYCCAACGKVIGILGFWKRQLMVAKDARRVDILCSRIYLSHRLLDGTTRFKEFHKIVEDAKAKLETEVGPLDGTSSKMARGI
VGRLPVAADVQKLCSLAIDMADAWLKSNCKAETKQIDTLPAACRFRFEDITTSSLVVVLKEAASSQYHAIKGYKLWYWNSREQPSTRVPAIFPKDQRRIL
VSNLQPCTEYAFRIISFTEYGDLGHSECKCFTKSVEIIHKNMEHGAEGCSSTAKRDSKSRNGWSSGFQVHQLGKVLRKAWAEENGCPSEACKDEIEDSCC
QSDSALHDKDQAAHVVSHELDLNESSVPDLNAEVVMPTESFRNENICSPGKNGLRKSNGSSDSDICAEGLVGEAPAMESRSQSRKQTSDLEQETYLEQET
GADDSTLLISPPKHFSRRLGQLDDNYEYCVKVIRWLECSGHIEKDFRMKFLTWFSLRSTEQERRVVITFIRTLADDPSSLAGQLLDSFEEIVSSKKPRTG
FCSKLWH

GO Analysis
1
GO Category Biological Process
GO Term cellular component organization
2
GO Category Biological Process
GO Term protein modification process
3
GO Category Molecular Function
GO Term molecular_function
4
GO Category Biological Process
GO Term flower development
5
GO Category Biological Process
GO Term response to stress
6
GO Category Biological Process
GO Term response to abiotic stimulus
7
GO Category Biological Process
GO Term cellular process
Presence of Splice variants No