LOC_Os12g32980

Expression Profile

RGAP LOCUS ID LOC_Os12g32980
RAP-DB ID Os12g0514400
Function potyvirus VPg interacting protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Nuclear
score 2.39

3) NUCPRED Prediction
localization Non Nuclear
score 0.71

4) Y-Loc Prediction
localization Nuclear
score 97.16
confidence value 0.41
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SAB23
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.131
NLS score -0.47
Protein Sequence >LOC_Os12g32980.1 protein
MGTSSGANFHQQQPPPPTSSAAAAAGAAAVAQGMLPPRRPTGLQTSLSLASSEQVGSPEMQEPGSNSDQGHDSATESASSRETWPAEPNHGSAAAVVAAS
TAASGGGGVVGGIGVGVRIVDKEKEVGNGIPKLQVIRGSSRLDRMSLREVARERVDLVAEKMKVMPEEHLEDMKNELRSILEGTGGSHHIEEFLYLQKFV
QSRGDLTQTMLSMAHHVQLEILVAIKTGIQAFLHPSVTIPQNRLVEVFLYKRCRNIACQSALPAEECRCNVCSNRNGFCNLCMCVICNKFDFEVNTCRWI
GCDFCSHWTHTDCAIRDGQIGMGQSIKSGTGHAEMLFRCQACQKTSELLGWVKDVFQQCAPGWDRDALLRELEFVCKIFRLSEDSKGRKLFRKCADLIER
LRNSPADAINPRMILQVLQELELDSPKSTENEEIGRLITPQEACNRIAEVVHEAVKKMELVAEEKMRLYKKARIAVEACDRELDEKARELQELKAERLRK
KQQVDELESIVRLKQAEAEMFQLKANEARQEADRLQSIALAKSERAEQDYASLYLKRRLEEAEAEKQFLFEKIKYQETQRPMQASGSGAGDSSQTPMLSK
IHDLLKNVRSIPPKTEGHQ

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Biological Process
GO Term reproduction
5
GO Category Biological Process
GO Term anatomical structure morphogenesis
6
GO Category Biological Process
GO Term post-embryonic development
7
GO Category Biological Process
GO Term embryo development
8
GO Category Biological Process
GO Term multicellular organismal development
9
GO Category Biological Process
GO Term cell differentiation
10
GO Category Molecular Function
GO Term binding
Presence of Splice variants No