| RGAP LOCUS ID |
LOC_Os12g32210 |
| RAP-DB ID |
Os12g0506800 |
| Function |
autophagy-related protein 10, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
7 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
2.356 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.02 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
70.86 |
| confidence value |
0.49 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsATG10b |
| Function assigned as per literature |
OsATG10b may play an important role in the survival of rice cells against oxidative stresses |
| Subcellular localization as per literature |
Cytosol |
| Cells used for localization experiment |
Rice Oc protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
19214435 |
| Reference of localization |
https://link.springer.com/article/10.1007/s10059-009-0006-2 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.077 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os12g32210.1 protein
MGGSSIGEGTLSLGDFVASAKALIEKWKVIDVEDSLPDWQWKPCGKTGVPSEEEGYLALEGVYRNPGGRHEQIGDSSNFDDADIVSDDAWAQSSSESVHI
YDYHVVYSFSYKVPVLYFQGHQAGGQLLTLDEIKEDLPSHSLKLLGESKWTFITREEHPHFSRPWFTLHPCGTSDCMKLLLEGVENKDQHVQYLPAWLSV
VGQAVGLKIPLELYASGLKTQE |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to biotic stimulus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cellular_component |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
catabolic process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
transporter activity |
|
| Presence of Splice variants |
YES |
