LOC_Os12g29520

Expression Profile

RGAP LOCUS ID LOC_Os12g29520
RAP-DB ID Os12g0479400
Function auxin response factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 3.294

3) NUCPRED Prediction
localization Non Nuclear
score 0.52

4) Y-Loc Prediction
localization Nuclear
score 94.59
confidence value 0.49
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category ARF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsARF24
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.102
NLS score 0.22
Protein Sequence >LOC_Os12g29520.1 protein
MAAAATAAASPVEGLTGGGGGGGGGVDGLFVELWRACAGPLVTVPAVGERVFYLPQGHIEQVEASTNQVAEQQGAPLYNLPWKIPCKVMNVELKAEPDTD
EVYAQLTLLPEKQQDGNGSGNGNVSKDKVEEEEVVPPAATERPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQHPPTQELVAKDLHGVEWRF
RHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQANIPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTSPSEFVVP
RDLYKESLKRNHSIGMRFKMTFEGEEAAEQRFTGTIVGVGDSDPSGWADSKWRSLKVRWDEAASVPRPDRVSPWQIEPANSPSPVNPLPAPRTKRARPNV
LASSPDLSAVNKEVASKVMANSQQNGLPRAFHSQENMNLRSRFGDSNELNTSQKLTMWSSGSNQEKNNVSVQRELGSQSWMQMRRPDGSSEILSGFQPLK
DTRNPLSSFPSQISGNRSNTWNTINVHYPDQNANHNMYPGTWSLMPPNTGFGVNQQNYLMTPDITLPQRSLNAKFGGNGAFTSLRAHGIDQRSSGWLGHI
EPSSHIDDASSSLIKPQPLVIDHNVQKAKGSSCMLFGISLDSPAKPELLISPPSVAFDGKLQQDALEEDECSDPSKTVKPLDGAQHDSAREKHQSCPDGT
KNIQSKQQNGSSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQK
MNPGALNSRSEDSRSTSVERGLVGEGLQGGLSTPSLNSENC

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term reproduction
5
GO Category Biological Process
GO Term multicellular organismal development
6
GO Category Biological Process
GO Term abscission
7
GO Category Biological Process
GO Term flower development
8
GO Category Biological Process
GO Term response to endogenous stimulus
9
GO Category Molecular Function
GO Term protein binding
10
GO Category Molecular Function
GO Term DNA binding
11
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
12
GO Category Cellular comBiological Processonent
GO Term plastid
13
GO Category Biological Process
GO Term cellular process
Presence of Splice variants YES