LOC_Os12g27994

Expression Profile

RGAP LOCUS ID LOC_Os12g27994
RAP-DB ID Os12g0465700
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 7

2) CELLO Prediction
localization Nuclear
score 3.958

3) NUCPRED Prediction
localization Non Nuclear
score 0.67

4) Y-Loc Prediction
localization Cytoplasm
score 62
confidence value 0.19
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) DEC
Function assigned as per literature DEC controls the phyllotactic pattern by affecting cytokinin signaling in rice
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 22889403
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1365-313x.2012.05123.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.064
NLS score -0.47
Protein Sequence >LOC_Os12g27994.1 protein
MDAAANSTPTSSASTVAQNQLHQRQIFLMQQAQAQAQAQGQGHTPTLQQLSQQAMSFFPSNIDAHLPLPGPDSTPTSSASTVAQNQLHQCQIFLMQQAQA
QAQAQGQGYTPTPQQLSQQAMSFFPSNIDAHLPLPGPIRFQQPLPQQPPPPQQQIHSWGPSLLQSWASLQQQQQAAVAAVARVQSPEVEMALQDVMQVCN
PDIKTPFQSIEDAVNRLLPYHVVADYEAEEDDRILDSDTTGQIPSRLQQWDHNILVKIAEFTTTFEKQVLAYNIMTKKRAIGEFRSEERLMLEQALLMEE
KQAMMGLRAEIESREKAGREAAEAKMRMAMAEQARAEAQAHSEMIGHGPLRAHAAASQGEDGPSHEMMQEQGEDGWGNAQRDDEDPSEDFLNDENEPENG
NSDMQEDWRRSGELDLNSR

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES