LOC_Os12g25720

Expression Profile

RGAP LOCUS ID LOC_Os12g25720
RAP-DB ID Os12g0443800
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 3.845

3) NUCPRED Prediction
localization Non Nuclear
score 0.46

4) Y-Loc Prediction
localization Nuclear
score 99.86
confidence value 0.99
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsFIGNL1
Function assigned as per literature OsFIGNL1 plays an important role in regulation of male meiosis and anther development.
Subcellular localization as per literature nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 29021797
Reference of localization https://www.frontiersin.org/articles/10.3389/fpls.2017.01639/full
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.134
NLS score -0.29
Protein Sequence >LOC_Os12g25720.1 protein
MAEQSHAGDGGGGGAGSGEPTNWRKEADDRLRRLHSLQFGADVALKGKDPAGAQVLALRLLGFLDSQALPGDGGAAGHEASFVAPIRAAASSSVAAAIRA
RAGRSDSAVFKLAEKDVGCVFAKTGEVNIEKIKCSKYFQALLQKSKGHAAEQMKTTDCQESTIEEGPHVEENSTDMENEKLSIRASKLVMQRKLTSLRSH
KPLKANVVQDGNMFKSVSNISNESVAVENGVRTNHTDNKYTAYMDLEDDDRPRGLLQNAKRKHAGFRSPICEHANSPLSNDEADAPANEFVTARTKLEMD
SVQKYGHNGTQGASVSPQCDNNPNNRNYGVRPTWNSRRGLRGNFVPPIRNNGGSTSNMTSRVIGKNDDSMGDSTRKWSVFPS

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No