LOC_Os12g23180

Expression Profile

RGAP LOCUS ID LOC_Os12g23180
RAP-DB ID Os12g0420200
Function 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Mitochondrial
score 2.282

3) NUCPRED Prediction
localization Non Nuclear
score 0.12

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.55
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) CSP41b|LGL1
Function assigned as per literature CSP41b is a novel gene required for normal leaf color and chloroplast morphology in rice
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Rice protoplasts cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28167036
Reference of localization https://www.sciencedirect.com/science/article/pii/S016894521630601X?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.122
NLS score -0.47
Protein Sequence >LOC_Os12g23180.1 protein
MAATASLKSSLLLPSPISDFSSAALSISTQARRRSWQPRGARMQVAAAADSKNILVMGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGESDAEY
AEFSSKVLHLKGDRQDFDFVKTSLAAKGFDVVYDINGREAVEVAPILDALPNLEQYIYCSSAGVYLKSDLLPHFETDAVDPKSRHKGKLETESLLETRDV
NWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPGAGNQITQLGHVKDLATAFVLALGNPKASKQVFNISGAKYVTFDGLARACAKAGGFPEPEIVHY
NPKDFDFGKKKAFPFRDQHFFASIEKATLELGWKPEYDLVEGLTDSYNLDFGRGTFRKAADFTTDDMILGKKLVSV

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term ribosome
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Cellular comBiological Processonent
GO Term extracellular region
4
GO Category Biological Process
GO Term response to stress
5
GO Category Biological Process
GO Term response to biotic stimulus
6
GO Category Cellular comBiological Processonent
GO Term peroxisome
7
GO Category Biological Process
GO Term cellular component organization
8
GO Category Biological Process
GO Term cellular process
9
GO Category Cellular comBiological Processonent
GO Term plastid
10
GO Category Biological Process
GO Term biological_process
11
GO Category Cellular comBiological Processonent
GO Term cellular_component
12
GO Category Biological Process
GO Term metabolic process
13
GO Category Biological Process
GO Term response to abiotic stimulus
14
GO Category Molecular Function
GO Term catalytic activity
15
GO Category Molecular Function
GO Term binding
16
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
17
GO Category Cellular comBiological Processonent
GO Term vacuole
18
GO Category Biological Process
GO Term protein modification process
Presence of Splice variants No