| RGAP LOCUS ID |
LOC_Os12g17910 |
| RAP-DB ID |
Os12g0277500 |
| Function |
T-complex protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
7 |
2) CELLO
Prediction
|
| localization |
Chloroplast |
| score |
2.594 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.07 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
9 |
| confidence value |
0.87 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsCPn60alpha1|OsCPn60a1 |
| Function assigned as per literature |
OsCpn60α1 is required for the folding of Rubisco large subunit (rbcL) |
| Subcellular localization as per literature |
Chloroplast stroma |
| Cells used for localization experiment |
Onion epidermis cells and rice mesophyll cell protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
23620301 |
| Reference of localization |
https://link.springer.com/article/10.1007/s10059-013-2337-2 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.116 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os12g17910.1 protein
MASANAISTASLLRSFSSQGRVRRAKNGRAQRLVVRADAKDIAFDQKSRAALQAGVEKLANAVGVTLGPRGRNVVLDEYGSPKVVNDGVTIARAIELYDP
MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKKGIDKTVHGLIEELEKKARPVKGSGDIKAVASISAGNDELIGSMIADA
IDKVGPDGVLSIESSSSFETTVDVEEGMEIDRGYISPQFVTNLEKSIVEFENAKVLITDQKITSIKEILPILEKTTQLRAPLFIIAEDITGEALATLVVN
KLRGILNVAAIKAPSFGERRKAVLQDIAIVTGAEFLAKDLGLLVENATEEQLGTARKVTIHQTTTTLIADAASKDEIQARVAQLKKELSETDSIYDTEKL
AERIAKLSGGVAVIKVGAATETELEDRQLRIEDAKNATFAAIEEGIVPGGGTAYVHLSTTVPAIKETIEDHDERLGADIIQKALVAPASLIAHNAGVEGE
VVVEKIKDGEWEVGYNAMNDKYENLIEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPVAEPAEGTLTV |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
protein metabolic process |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
extracellular region |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
nucleotide binding |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
thylakoid |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
embryo development |
|
| 9 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| 10 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
mitochondrion |
|
| 11 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
ribosome |
|
| 12 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytosol |
|
| Presence of Splice variants |
No |
