LOC_Os12g10184

Expression Profile

RGAP LOCUS ID LOC_Os12g10184
RAP-DB ID None
Function pentatricopeptide, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 12

2) CELLO Prediction
localization Mitochondrial
score 2.545

3) NUCPRED Prediction
localization Non Nuclear
score 0.18

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.36
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) PGL12
Function assigned as per literature  PGL12 is a new PLS-type PPR protein required for proper chloroplast development and 16S rRNA processing in rice.
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 30508149
Reference of localization https://academic.oup.com/pcp/advance-article-abstract/doi/10.1093/pcp/pcy229/5227978
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.12
NLS score -0.47
Protein Sequence >LOC_Os12g10184.1 protein
MAMASSSLAAANHPLLPSKPLSCPKPLTRATPLSRALHAGAAAAARGASSSQAELRPDSKNAPALSAELRRLARVGRLPSALALLDHLSHRGVPATASAF
AALLTACRSLAHARQVHAHLRVHGLDSNEFLLARLVELYLALGAREDARKVLDGLPRASSFSWNALLHGHVRRGRGQAGAAVVDGFAEMRAAGADANEYT
YGCVLKSISGSAAPSMAMATATHAMLIKNAYAGAPRMLMTGLMDVYFKCGKVKPAVMVFEEMPERDVVAWGAVIAGFAHKGMKREALEHFRWMVEDGIKV
NSVVLTSVVPVIGELRAWNLGREIHGFVLKKFQHRKDVGNIQAGLVDMYCKCGDMVSGRRVFYSAKKRNVVSWTALMSGYASNGRPDQALRCILWMQQEG
IRPDLIAVGTVLPVCTKLKALREGKELHAYALRRWFLPNISLCTSLITMYGTCSHSDYSQRVFHVMDKKTVQAWTALVDAYLKNGDPSTAVDVFRSMLLS
NRRPDAVAISRMLSACRDIGASKLGKELHGQALKLRMEPLPLVAAGLVSMYGTCGDLKAAQRVFNRIESKGSLTCTAIIEAYAINQRHKEALELFAWMLS
NRFVPNNGTFDVLLRICEAAGLHDEALQIFNSMVQEYNLEASEHNFDCIIRLLTAADRTSEAHRFADLKATLFNLSTPSLNC

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No