LOC_Os12g08810

Expression Profile

RGAP LOCUS ID LOC_Os12g08810
RAP-DB ID Os12g0190000
Function VTC2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 6

2) CELLO Prediction
localization Cytoplasmic
score 1.814

3) NUCPRED Prediction
localization Non Nuclear
score 0.19

4) Y-Loc Prediction
localization Cytoplasm
score 78
confidence value 0.55
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGGP
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.096
NLS score -0.22
Protein Sequence >LOC_Os12g08810.1 protein
MEMKLTIKRVPTVVSNYQEDAAATAGERPRAGCGRDCLGDCCLPDSKLPLYAFKASPKKPSSQEDASNDEFFVNLLLGLWEDRMARGLFRYDVTACETKV
IPGNLGFVAQLNEGRHLKKRPTEFRVDRVLQPFDAAKFNFTKVGQEEVLFQFENGGGDDSFFVESSPISVADRAPNVVAINVSPIEYGHVLLIPRVLDRL
PQRIDQESFLLALHMAAEAASPYFRLGYNSLGAFATINHLHFQAYYLTVPFPVEKAATKRIFLAEGTMNSGVKVSKLMNYPVRGLVFEGGNSLSDLANVV
SSACIWLQDNNVPYNVLISDCGKKIFLFPQCYAEKQALGEVSQELLDTQVNPAVWEISGHIVLKRRSDYEEASEASAWRLLAEVSLSEERFEEVKAYIFD
AAGLVQSDEEEVSEDEDATYTPVSIAPPAVAEGCLVLQ

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Molecular Function
GO Term transferase activity
3
GO Category Biological Process
GO Term metabolic process
4
GO Category Molecular Function
GO Term protein binding
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term cellular process
7
GO Category Biological Process
GO Term response to endogenous stimulus
8
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No