LOC_Os12g07280

Expression Profile

RGAP LOCUS ID LOC_Os12g07280
RAP-DB ID Os12g0170400
Function ZOS12-02 - C2H2 zinc finger protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 3.926

3) NUCPRED Prediction
localization Non Nuclear
score 0.6

4) Y-Loc Prediction
localization Nuclear
score 99.97
confidence value 0.97
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category C2H2

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) ART1
Function assigned as per literature ART1regulates 31 genes implicated in Al tolerance
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice callus protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 19880795
Reference of localization http://www.plantcell.org/content/21/10/3339.long#sec-15
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.105
NLS score 0.16
Protein Sequence >LOC_Os12g07280.1 protein
MDRDQMTNTMRDQAANLTSMNPLFYPFMADDALLGMAPPPPQQLLPSVSIQHMDWSPDTMLDNLTFIEEKIRQVKDVIRSMAGRRASSSSAATPEQQLVN
ADLTCLIVQLISTAGSLLPSLKNSSFLSRTTPPPAAAAGAAQAVSLAAGESSSSARNNETNREDEEEQMGSPDYDELFKVWTNGGAMDECVGAAGDEQDA
RENPAAAAEEEKYEVLQLEEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQPPQPERRYSCPHAGCKRNRMHASFQPL
KTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMADLKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVALFQGHAPALPPPPPPPTSGRRRHKQEEPEFTWGG
GGGNEFLDVKGIAGVGSGSGGGDEFFSAGSFGAMDFGFGQLDASLAMLLPSEQFAGDHQEENGDK

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term response to abiotic stimulus
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Molecular Function
GO Term binding
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
8
GO Category Molecular Function
GO Term nucleic acid binding
Presence of Splice variants No