LOC_Os12g07190

Expression Profile

RGAP LOCUS ID LOC_Os12g07190
RAP-DB ID Os12g0169400
Function CBS domain-containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Mitochondrial
score 1.552

3) NUCPRED Prediction
localization Non Nuclear
score 0.31

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.58
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCBSCBSPB4
Function assigned as per literature OsCBSCBSPB4 is a two Cystathionine-β-Synthase domain-containing protein from rice that functions in abiotic stress tolerance
Subcellular localization as per literature Nucleus and Cytoplasm
Cells used for localization experiment Onion peel epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 29491732
Reference of localization https://www.ingentaconnect.com/contentone/ben/cg/2018/00000019/00000001/art00008
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.114
NLS score 0.13
Protein Sequence >LOC_Os12g07190.1 protein
MSTASATAPPSRRTRSRPPSASSRKSDDPSAAAANGNGKASSKPTSPGQLTGERTVRKLRLSKALTIPEGTTVSEACRRMAARRVDAVLLTDAQGLLSGI
VTDKDVATRVVAEGLRVEQTIMSKIMTRNPTYAMSDTLAIEALQKMVQGKFRHLPVVENGEVIAMLDIAKCLYDAISRLEKAAEQGSAIAAAVEGVERQL
GGNFSAPYAFIETLRERMFKPSLSTIVTEGTKVAIVSPSDPVYVATQKMREFRVNSVVVATGNTLQGIFTSKDLLMRVVAQNLSPELTLVEKVMTVNPDF
ATLDTTILDALHIMHDGKFLHIPVLDREGQIAACLDVLQLTHAAIQLVEGGNDTVNDVANTVMQRFWDSTLALESPDEECDSRSEVSLLLASETGDGKSS
IYPPVIGNSFAFKLQDQKGRVHRFTCGSESLNELASSIKQRLSITDEEGIMQLLYEDDEGDRVLLTTDADLAGAVLHAKSSGLKVLKLHIDLSESSTEVT
KPSQQLAAARRSRLSPVRVGLMAGVVALSGAAVMVYLKRAKV

GO Analysis
Presence of Splice variants No