LOC_Os12g06650

Expression Profile

RGAP LOCUS ID LOC_Os12g06650
RAP-DB ID Os12g0163600
Function tetratricopeptide-like helical, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Mitochondrial
score 1.255

3) NUCPRED Prediction
localization Non Nuclear
score 0.04

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.86
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPGL1
Function assigned as per literature OsPGL1 is required for RNA editing
Subcellular localization as per literature chloroplasts and mitochondria
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29562289
Reference of localization https://academic.oup.com/jxb/article/69/12/2923/4942082
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.098
NLS score -0.47
Protein Sequence >LOC_Os12g06650.1 protein
MTATSNAAAGAATLMPLLIHLLRGASDLASVSATHAKLLKLGAASSVASSNHLLAAYGRCGCTALARHLFDGMRDRNVVSWTALMSGYASAGRPRAAVAL
LRAMARSGVPPNAFTFSTAASSCARLADAGLGRQVHARAEVAGYACDSVVSTALVDMYGKAGRVGDARAVFDAMPVTARNAVSWASMLSVYAQNALGHDA
IQLFAELRTNGEDMAPNHFMLSSVVNACAGVGRLGIGKCIHGMVLHHGHEDNDVVAVALVDMYSKCGIYEYSKKVFDRINQPSVIPYTSIIVATAKYGLG
RCALALFSDMVGRGVQPNSVTLLGVLHACSHSGLVDTGLQLLRSMRSEYGIDPCASHYTCAVDMLGRAGQLEAAFELADEAQVNGNDALMLWSSLLSACR
NHKRLDLATMAGQKVSEFTQDVAGALVVMSNAYASAGQADDAAAVWSNMRRRGIRKDPGCSWIEIKDISYVFYAGMVSPAGSRAGEVMLLLDELEGKMRE
KGYKGRIGSARVLDADEEEDGNHHHQEGRGVMVGVHSELLALGLGLLVIPKGMAIRVMKNLRMCRDCHEAFKVISAIVEREFVVRDLNRFHHFRMGSCSC
NDYW

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No