LOC_Os12g06200

Expression Profile

RGAP LOCUS ID LOC_Os12g06200
RAP-DB ID Os12g0158800
Function E2F family transcription factor protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 9

2) CELLO Prediction
localization Nuclear
score 3.731

3) NUCPRED Prediction
localization Non Nuclear
score 0.72

4) Y-Loc Prediction
localization Nuclear
score 69.98
confidence value 0.1
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category E2F/DP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsE2F2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.099
NLS score 0.49
Protein Sequence >LOC_Os12g06200.1 protein
MAAAGAGSSEVAARVLLQRYQPFAPPPGEYHQFGSGGAAAAGDMTEAVLIRTPLKRKHDREENEAAESNDWMMSPGYTNPAGSPVPTPLSGKGSKAFAKS
KAAKGQKSCPQTPLCASSPGNPVTPVGGCRYDSSLGLLTKKFLNLLKGAPGGIVDLNNAAETLEVQKRRIYDITNVLEGIGLIEKKLKNNIRWKGIDDSR
PGEVSDDMSILQADIEALSLQEHSVDQQISEMRDKLRGLTEDENNQKWLYVTEDDIKSLPCFQNQTLIAIKAPHGTTLEVPDPDEVNDYPQRRYRIVLRS
TMGPIDVYLVSQFEEMSGMETPPRTVQPVSMDSLENPRTPLAAEPNKAAESQPNIQDGLLMPSDAPSSSQDIGGMMKIVPSELDTDADYWLLSDAGVSIT
DMWKTAPEVEWEGIEKFNAEDFLEVSTPRQQDKPSSDIMDGDSCIS

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Molecular Function
GO Term protein binding
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Cellular comBiological Processonent
GO Term nucleoplasm
6
GO Category Biological Process
GO Term cell cycle
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
8
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES