LOC_Os12g04240

Expression Profile

RGAP LOCUS ID LOC_Os12g04240
RAP-DB ID Os12g0137100
Function peflin, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 2.52

3) NUCPRED Prediction
localization Non Nuclear
score 0.11

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.39
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCBP
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.079
NLS score -0.47
Protein Sequence >LOC_Os12g04240.1 protein
MAGYPPNPGSGYPYGGAGGYGAPPPPYGSSPAPSAPPYGAKPPKEGKTSSSSAPYYGGGGGYGAPPSTQPYGSGGGYGAPPSSQPYGAPYGAPPPSSAPY
GAPGGYGSPFASLVPSAFPPGTDPNVVACFQAADRDGSGMIDDKELQSALSGYSQSFSLRTVHLLMYLFTNTNVRKIGPKEFTSVFYSLQNWRSIFERFD
RDRSGKIDATELRDALLSLGYSVSPTVLDLLVSKFDKTGGKNKAIEYDNFIECCLTVKGLTEKFKEKDTAFSGSATFTYEAFMLTVLPFLIA

GO Analysis
1
GO Category Molecular Function
GO Term binding
2
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES