LOC_Os12g03899

Expression Profile

RGAP LOCUS ID LOC_Os12g03899
RAP-DB ID Os12g0133100
Function major facilitator superfamily antiporter, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 9

2) CELLO Prediction
localization PlasmaMembrane
score 4.968

3) NUCPRED Prediction
localization Non Nuclear
score 0.21

4) Y-Loc Prediction
localization Nuclear
score 73.81
confidence value 0.14
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsVMT|OsZIFL12
Function assigned as per literature OsVMT is involved in sequestering DMA into the vacuoles and plays important role in enhancing the accumulation of Fe and Zn in polished rice grains through DMA-increased solubilization of Fe and Zn deposited in the node
Subcellular localization as per literature Tonoplast
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31331995
Reference of localization http://www.plantphysiol.org/content/181/1/276.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.08
NLS score -0.47
Protein Sequence >LOC_Os12g03899.1 protein
MGDHGRRRQAAAPLLEKKGSTGTGVDDGYCIEGCPGCVVDRRKAASYGIPYGSFLFVWIVTLCTALPISSLFPFLYFMIRDLHVAKRTEDIGFYAGFVGA
SFMFGRCLTSTVWGIAADRIGRKPVVVFGIFAVVIFNTLFGLSFTYWMAIATRFLLGALNGLLGPIKAYAIEVCRPEHEALALSLVSTAWGIGLIIGPAI
GGYLSQPAEKFPNVFSPDSLFARFPYFLPCLCISVFAAVVLIGCIWMPETLHKHKADASRSQTVEALESHLIDPKEKADQNGSLDCKKSLLRNWPLMSSI
ILYCVFSFHDMAYTEIFSLWAESDRKYGGLSLSSEDVGQVLAITGVSLLVYQLFIYPRINKVIGHIKASRIAAILCIPILFAYPYMTYLSGPGLTIILNI
ASVIKNNLGVTIITGCFILQNNAVPQDQRGAANGLAMTGMSFFKAVAPAGAGIVFSWAQKRQHASFLPGDQMVFFLLNLFELLGLILTFKPFLAVPEQHD
TN

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term response to abiotic stimulus
3
GO Category Biological Process
GO Term cellular process
4
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants YES