LOC_Os12g03822

Expression Profile

RGAP LOCUS ID LOC_Os12g03822
RAP-DB ID Os12g0132400
Function WD domain, G-beta repeat domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 7.5

2) CELLO Prediction
localization Nuclear
score 1.844

3) NUCPRED Prediction
localization Non Nuclear
score 0.34

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.98
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) RIP1
Function assigned as per literature RIP1 is probably a nuclear protein that may form a functional complex with other proteins and carry out essential cellular and developmental roles during the late stage of pollen formation
Subcellular localization as per literature nucleus
Cells used for localization experiment Oc-cultured cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 16990291
Reference of localization https://academic.oup.com/pcp/article/47/11/1457/2329576
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.097
NLS score -0.16
Protein Sequence >LOC_Os12g03822.1 protein
MGRKIKVKKKKASSKKAEASSSRVPSCPAKVWQPGVDTLEEGEELQFDPQAYNYLRGFNIGWPCLSFDVVRDQLGLVRSEFPHTLYGVAGTQAERASWNY
IGIFKICNINGKKREPIPASAIDGDSDMDSESSSDEEDEAANEDTMPILHLKKVAHAGCVNRIRSMNQEPHICATWGDTGHVQVWDFSSFLNSLAESGAV
AHNEDDRIHNHVPVKIFGGHKDEGYAIDWSPLVTGRLVSGDCNKCIHLWEPTSNSWNVDTNPFVGHTASVEDLQWSPTEADIFASCSADRTISIWDIRTG
KKPCISVRAHNADVNVISWNRLASCMIASGCDDGSFSIRDLRLIKDDSLVAHFEYHKHPITSVEWSPHEPSTLAVSSADHQLTIWDLSLEKDAEEEAEFR
ARMREQADAPEDLPPQLLFVHQGQKDLKELHWHPQIPSMIISTAADGFNMLMPSNIDTTIREADA

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Molecular Function
GO Term nucleotide binding
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES