LOC_Os12g03816

Expression Profile

RGAP LOCUS ID LOC_Os12g03816
RAP-DB ID Os12g0132300
Function OsCML3 - Calmodulin-related calcium sensor protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Nuclear
score 3.279

3) NUCPRED Prediction
localization Non Nuclear
score 0.4

4) Y-Loc Prediction
localization Nuclear
score 66.09
confidence value 0.83
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCML3
Function assigned as per literature OsCML3 may provide a mechanism for manipulating the DNA-binding ability of OsHMGB1 in the nucleus with the CTE providing an intracellular Ca2+ regulatory switch
Subcellular localization as per literature Plasma membrane but in nucleus when interacted with OsHMGB1
Cells used for localization experiment Tobacco leaf cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 26423116
Reference of localization https://academic.oup.com/abbs/article/47/11/880/1446
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.109
NLS score -0.47
Protein Sequence >LOC_Os12g03816.1 protein
MDHLTKEQIAEFREAFNLFDKDGDGTITSKELGTVMGSLGQSPTEAELKKMVEEVDADGSGSIEFEEFLGLLARKLRDTGAEDDIRDAFRVFDKDQNGFI
TPDELRHVMANLSDPLSDDELADMLHEADSDGDGQINYNEFLKVMMAKRRQNMMEGHGSGGHRSSNSHKKSGCCGPNSSCTIL

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Cellular comBiological Processonent
GO Term vacuole
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Molecular Function
GO Term binding
5
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No