LOC_Os12g01560

Expression Profile

RGAP LOCUS ID LOC_Os12g01560
RAP-DB ID Os12g0106300
Function PMR5, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 7

2) CELLO Prediction
localization Cytoplasmic
score 1.807

3) NUCPRED Prediction
localization Non Nuclear
score 0.19

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.2
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTBL1
Function assigned as per literature OsTBL1 has role in xylan acetylation in rice plants
Subcellular localization as per literature Golgi
Cells used for localization experiment Nicotiana benthamiana leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27864442
Reference of localization http://www.plantphysiol.org/content/173/1/470.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.118
NLS score 0.28
Protein Sequence >LOC_Os12g01560.1 protein
MWSALFSHLREVHKRSGVKEEKLIMKSPPAAGEAGCHKPQATATNKMTVLQSPLGLRTILTSLVAFFIVVSSVSLLFDRGQDAQAQLAVEQHQHQEVLLK
QKPASAAVGEQKSVVVDQSSLRSQEAQVQWTSELQDVATDSGDGGFDGEEDCNWSLGRWVYDNASRPLYSGLKCSFIFDEVACDKYGRNDTKYQHWRWQP
HGCNLPRFNATKFLEKLRNKRLVFVGDSVNRNQWVSMVCMVEHFIPDGRKMRVYNGSLISFKAFEYNATIDFYWSPLLLESNSDNPIIHRVEYRIIRADR
IEKHANVWKDADFIVFNSYLWWRKQRDGMMMKVMYGSFEDGDAKLDEVQMVDGYEIALKKLTEYLGANINKNKTRIFFAGSSPAHSWASNWGGDDNNKCL
NETEPIQIEDYRSATTDYGMMDKAKEIFGTLEPKGIHVQILNITQLSEYRKDAHPTIFRRQYVPLTKEQIANPSIYADCTHWCLPGVPDVWNEFLYAYIM
HK

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term Golgi apparatus
2
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No