LOC_Os12g01550

Expression Profile

RGAP LOCUS ID LOC_Os12g01550
RAP-DB ID Os12g0106200
Function DUF260 domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 7

2) CELLO Prediction
localization Nuclear
score 2.462

3) NUCPRED Prediction
localization Non Nuclear
score 0.34

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.1
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category LOB/LBD

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) LBD12-1
Function assigned as per literature LBD12-1 plays an important role in shoot apical meristem (SAM) size determination by regulating the expression of AGO10 under stress conditions
Subcellular localization as per literature Nucleus
Cells used for localization experiment Root cells of transgenic rice plant
NUCLEAR or Not Nuclear NUCLEAR
PMID 27895202
Reference of localization http://www.plantphysiol.org/content/173/1/801.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.077
NLS score -0.47
Protein Sequence >LOC_Os12g01550.1 protein
MAGSGSGTPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQM
QLALAHAETAALQLQLQQQHQDQDDHHHQQCILENAAAHHQLMLQEAFLKKESMWT

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term anatomical structure morphogenesis
3
GO Category Biological Process
GO Term multicellular organismal development
Presence of Splice variants No