LOC_Os12g01190

Expression Profile

RGAP LOCUS ID LOC_Os12g01190
RAP-DB ID Os12g0102400
Function RNA recognition motif containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 4.047

3) NUCPRED Prediction
localization Non Nuclear
score 0.6

4) Y-Loc Prediction
localization Nuclear
score 99.96
confidence value 0.99
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRINGC2-2
Function assigned as per literature OsRINGC2-2 mediates salt tolerance in Arabidopsis
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment Tobacco leaf epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 22705026
Reference of localization https://www.sciencedirect.com/science/article/pii/S0378111912006798?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.098
NLS score -0.47
Protein Sequence >LOC_Os12g01190.2 protein
MTMSDDGDRTCPLCAEDMDITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCPACRTRYDKDRIVKMAATCDRTVVEKNVDKKQKTQKVKSKAAVTV
EAKKHLASVRVIQRNLVYIIGLPANLCNESILERREYFGQYGKVLKVSVSRPTGAPSQQAPTNNSISVYITYAKEEEAIRCIQAVHNFVLEGKVLRACFG
TTKYCHAWLRNMTCGNPDCLYLHDVGSQEDSFTKDEIISAYTRSRVPQMASNVSQRRAGTVLPPPAEDFSYSAVVAAKHPIKNGITNTANQSRLSPPNSS
SGRSTLPPAASWGHRDLNTRTTATGVASSQSLTKSKADPQSNSFSSSSTVSSTKLPSSWNDDTSTVPKMTEGRDSLSKTLKPYKPGIAKETQAVTSLESS
LDIDFSTIPSAWNDDDVTSDGMSKGSDEKQVVNDNGKFECSVSSKPAESGHLTSKSTTSPKKDIAVNSTRQSPLNCVSSPSVSKSEVKDGDGDYQVTNMA
SKTSTLVIRKDQSNQAAIDTATEDTRSESTDIDRLSVGVSSVTLSRKDGVQSIAENQQPDAILSTSVVVPFSQNLKLAECNDSTCQPSSDKHRDWCSDIQ
SSVSPQLNDIESYAVATDKSHGRVLDAADQASSSPYVHFPNTAPISLWNGKEINHTSTSDRTSTMMQPGLLSSVDSTSTMLNGHQEGLGTIYAPGKVSEH
PRMKNHQPGAVGAVRIDNIGSFDKAVSVNKDESSIIADILSLEFDPWDESYSTANNFAKMLSASEKNDVLFDARSWKTKTSNSESRFSFARQDNQGSLLD
SSMRNYKSEQNFSLPSQNSHGNIYQSGIAFQSPEEGFSKSNSLTMLDMLATGTSKPKVSAPPGFSAPARVPTGFSSGFSSHEGLNPPPGFSSHNGPNPPP
GFSSQGGSNQIYGSAYSETRPFDDLLGINTSHYQPQLARQTSDIEFVDPAILAVGKGRMPGISDSGLEMKTSHTFPSQLQTSNDPRFQLLMQQNMPSHQN
VGFAEHVQDAFNPMNDNYLASRLIPQNHGSLSSYTQMSLQQPRSSHLTNGHWDGWGDLRQGNNVSMPDMSRMLYPTEANNFHMLGSNDLYNRAFGL

GO Analysis
1
GO Category Molecular Function
GO Term RNA binding
2
GO Category Molecular Function
GO Term nucleotide binding
3
GO Category Molecular Function
GO Term binding
4
GO Category Biological Process
GO Term biological_process
5
GO Category Molecular Function
GO Term nucleic acid binding
Presence of Splice variants No