LOC_Os11g47809

Expression Profile

RGAP LOCUS ID LOC_Os11g47809
RAP-DB ID Os11g0704500
Function metallothionein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9

2) CELLO Prediction
localization Nuclear
score 1.755

3) NUCPRED Prediction
localization Non Nuclear
score 0.06

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.48
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMT1a|rgMT
Function assigned as per literature rgMT gene plays an important role in alleviating the toxic effects of metal ions , salts and oxidative stresses that the rice plants may encounter in soil
Subcellular localization as per literature Cytosol
Cells used for localization experiment Transgenic Arabidopsis leaves and yeast cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25572229
Reference of localization https://www.ias.ac.in/article/fulltext/jgen/093/03/0709-0718
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.095
NLS score -0.47
Protein Sequence >LOC_Os11g47809.1 protein MSCSCGSSCSCGSNCSCGKKYPDLEEKSSSTKATVVLGVAPEKKAQQFEAAAESGETAHGCSCGSSCRCNPCNC

GO Analysis
1
GO Category Molecular Function
GO Term binding
2
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No