LOC_Os11g47330

Expression Profile

RGAP LOCUS ID LOC_Os11g47330
RAP-DB ID Os11g0696200
Function ATP-grasp domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 5

2) CELLO Prediction
localization Cytoplasmic
score 2.695

3) NUCPRED Prediction
localization Non Nuclear
score 0.11

4) Y-Loc Prediction
localization Nuclear
score 54.91
confidence value 0.12
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) EDT1
Function assigned as per literature EDT1 plays an important role in rice pollen development by regulating tapetum programmed cell death
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment Rice protoplasts and Nicotiana benthamiana epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 31515447
Reference of localization http://www.plantphysiol.org/content/181/3/1223.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.118
NLS score 0.36
Protein Sequence >LOC_Os11g47330.1 protein
MARKKIREYDSKRLLKEHLKRLAGIDLQILSAQVTQSTDFTELVNQQPWLSTMKLVVKPDMLFGKRGKSGLVALNLDIAQVKEFVKERLGVEVEMGGCKA
PITTFIVEPFVPHDQEYYLSIVSERLGSTISFSECGGIEIEENWDKVKTIFLPTEKPMTPDACAPLIATLPLEARGKIGDFIKGVFAVFQDLDFSFLEMN
PFTIVNGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVLSSTEGFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
YAEYSGAPNEEEVLQYARVVLDCATADPDGRKRALLIGGGIANFTDVGATFSGIIRALREKESKLKAARMHIYVRRGGPNYQTGLAKMRKLGAELGVPIE
VYGPEATMTGICKQAIECVMAAA

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term transferase activity
4
GO Category Biological Process
GO Term metabolic process
5
GO Category Cellular comBiological Processonent
GO Term cytosol
6
GO Category Cellular comBiological Processonent
GO Term cytoplasm
Presence of Splice variants No