LOC_Os11g43900
| RGAP LOCUS ID | LOC_Os11g43900 | ||||
| RAP-DB ID | Os11g0660500 | ||||
| Function | translationally-controlled tumor protein, putative, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | cyto | ||||
| score | 7 | ||||
2) CELLO Prediction |
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| localization | Cytoplasmic | ||||
| score | 2.692 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.01 | ||||
4) Y-Loc Prediction |
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| localization | Cytoplasm | ||||
| score | 99 | ||||
| confidence value | 0.93 | ||||
| Number Of Software Predicting Nucleus | 0 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | OsTCTP | ||||
| Function assigned as per literature | OsTCTP improves rice performance under Hg contaminated paddy soils | ||||
| Subcellular localization as per literature | Cytosol and nucleus | ||||
| Cells used for localization experiment | Onion epidermal cells | ||||
| NUCLEAR or Not Nuclear | NUCLEAR | ||||
| PMID | 25990386 | ||||
| Reference of localization | https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-015-0500-y | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 0 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.113 | ||||
| NLS score | -0.47 | ||||
| Protein Sequence | >LOC_Os11g43900.1 protein MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYIKNLSA KLDAEKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC |
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GO Analysis |
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| 1 |
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| 2 |
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| Presence of Splice variants | YES | ||||