LOC_Os11g41890

Expression Profile

RGAP LOCUS ID LOC_Os11g41890
RAP-DB ID Os11g0637700
Function RNA recognition motif containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 1.814

3) NUCPRED Prediction
localization Non Nuclear
score 0.15

4) Y-Loc Prediction
localization Cytoplasm
score 60
confidence value 0.74
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) LGG
Function assigned as per literature LGG is a putative RNA-binding protein that regulates spikelet hull length in rice.
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice calli
NUCLEAR or Not Nuclear NUCLEAR
PMID 30690508
Reference of localization https://academic.oup.com/pcp/article-abstract/60/3/503/5300156
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.086
NLS score -0.13
Protein Sequence >LOC_Os11g41890.1 protein
MEADAGKLFIGGISWDTNEDRLREYFDKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAERVIMEKHMIDGRMVEAKKAVPRDDQHALSKSGGSAHGSP
GPSRTKKIFVGGLASTVTEADFRKYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALFKTFHELNGKMVEVKRAVPKELSPGPSMRSPVGGFN
YAVNRANNFLNGYTQGYNPSPVGGYGMRMDARFGLLSGGRSSYPSFGGGYGVGMNFDPGMNPAIGGSSSFNNSLQYGRQLNPYYSGNSGRYNSNVSYGGV
NDSTGSVFNSLARNLWGNSGLSYSSNSASSNSFMSSANGGLGGIGNNNVNWGNPPVPAQGANAGPGYGSGNFGYGSSETNFGLGTNAYGRNAGSGVVNTF
NQSTNGYGRNFGDSSGGGGGGGGGSIYGDTTWRSGSSELDGTSPFGYGLGNAASDVTAKNSAGYMGH

GO Analysis
1
GO Category Molecular Function
GO Term RNA binding
2
GO Category Molecular Function
GO Term nucleotide binding
3
GO Category Molecular Function
GO Term nucleic acid binding
Presence of Splice variants No