LOC_Os11g40150

Expression Profile

RGAP LOCUS ID LOC_Os11g40150
RAP-DB ID Os11g0615800
Function DNA repair protein Rad51, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 5

2) CELLO Prediction
localization Cytoplasmic
score 2.5

3) NUCPRED Prediction
localization Non Nuclear
score 0.28

4) Y-Loc Prediction
localization Nuclear
score 95.61
confidence value 0.88
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRad51|OsRad51A1
Function assigned as per literature OsRad51A1 participates in homologous chromosome pairing
Subcellular localization as per literature Nucleus when interacts with OsFIGNL1
Cells used for localization experiment Nicotiana benthamiana leaves cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 29021797
Reference of localization https://www.frontiersin.org/articles/10.3389/fpls.2017.01639/full
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.106
NLS score -0.47
Protein Sequence >LOC_Os11g40150.1 protein
MSTSAAASAAAEQQQEEGEHGPFPIEQLQASGIAALDVKKLKDSGLYTVESVAYTPRKDLLQIKGISEAKVDKIVEAASKLVPLGFTSASQLHAQRLEII
QVTTGSRELDKILDGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQ
SRLLLEAASMMIETRFALMIVDSATALYRTDFSGRGELSARQMHMAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAMFAGPQIKPIGGNIMAHASTTRL
ALRKGRGEERICKVISSPCLAEAEARFQIASEGVADVKD

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term metabolic process
4
GO Category Biological Process
GO Term response to stress
5
GO Category Biological Process
GO Term DNA metabolic process
6
GO Category Molecular Function
GO Term nucleotide binding
7
GO Category Biological Process
GO Term biosynthetic process
8
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
9
GO Category Biological Process
GO Term response to abiotic stimulus
10
GO Category Molecular Function
GO Term protein binding
11
GO Category Molecular Function
GO Term hydrolase activity
12
GO Category Biological Process
GO Term catabolic process
Presence of Splice variants No