LOC_Os11g36440

Expression Profile

RGAP LOCUS ID LOC_Os11g36440
RAP-DB ID Os11g0572700
Function amine oxidase, flavin-containing, domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Cytoplasmic
score 1.539

3) NUCPRED Prediction
localization Non Nuclear
score 0.03

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.25
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCRTISO|ZEBRA2|MHZ5|MIT3
Function assigned as per literature MIT3 encodes a carotenoid isomerase involved in carotenoid biosynthesis
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Rice leaf protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29362087
Reference of localization https://www.sciencedirect.com/science/article/pii/S0168945217305642
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.106
NLS score 0.02
Protein Sequence >LOC_Os11g36440.1 protein
MPLLLLAAARPCAPLLAPSAAGAVVGRPSTARPLGRGTRRGAGAAAAAAVAAEKTVVKAEEEEEGGGEYDAIVVGSGIGGMVAATQLAAKGARVLVLEKY
VIPGGSSGYYRRDGFTFDVGSSVMFGFSDKGNLNLITQALEAVGHKMEVIPDPSTVHFHLPGDLSVLVHREYDDFVTELVNKFPHEKEGILKFYGTCWKI
FNSLNSLELKSLEEPLYLFGQFFQKPLECLTLAYYLPQNAGDIARKFIKDQQLLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGINYPVGGVGGIA
MSLADGLVDKGSEIRYKANVTNVILENGKAVGVRLSNGKEFFAKTVISNATRWDTFGKLLKVEELPEEEKNFQKNYVKAPSFLSIHMGVKASVLPADTDC
HHFVLEDDWANLEKPYGSIFLSIPTVLDPSLAPEGHHILHIFTTAGIEDWEGLSRKDYEKKKELVATEIIKRLEKKLFPGLQDSIVLKEVGSPKTHRRFL
ARNDGTYGPMPRGKPKGLLAMPFNTTSIDGLYCVGDSCFPGQGVIAVAFSGIMCAHRVAADIGLEQRSPVLDAGLLGLLRWLRTLA

GO Analysis
1
GO Category Molecular Function
GO Term catalytic activity
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Biological Process
GO Term cellular component organization
4
GO Category Biological Process
GO Term cellular process
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term lipid metabolic process
7
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No