LOC_Os11g34460

Expression Profile

RGAP LOCUS ID LOC_Os11g34460
RAP-DB ID Os11g0547000
Function OsFBO10 - F-box and other domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto_Nuclear
score 5

2) CELLO Prediction
localization Cytoplasmic
score 2.018

3) NUCPRED Prediction
localization Non Nuclear
score 0.14

4) Y-Loc Prediction
localization Nuclear
score 99.91
confidence value 0.97
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) FKF1|OsFKF1
Function assigned as per literature OsFKF1 promotes flowering independent of photoperiod
Subcellular localization as per literature Nucleus and cytosol
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 25850808
Reference of localization https://onlinelibrary.wiley.com/doi/pdf/10.1111/pce.12549
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.102
NLS score -0.22
Protein Sequence >LOC_Os11g34460.1 protein
MFDAGDRGGGGGVVAVKRMKLCEEEEEEEEGMEVDEEEEEVGWVWRPPGGLAGEDEAAAWEGRAAAIVVSDAVEVDFPVIYVNAAFEAATGYRADEVLGR
NCRFLQFRDPRAQRRHPLVDPMVVSEIRRCLNEGIEFQGELLNFRKDGAPLYNRLRLIPMHGDDGFVTHVIGIQLFSEANIDLSNVSYPVYKQQSNHRPN
IQEINPASHEHIPKIQSSEYCCILQLSDEVLAHNILSRLSPRDVASIGSVCTRMHELTKNDHLRKMVCQNAWGRDVTVRLEMSTKMLGWGRLARELTTLE
AASWRKFTVGGRVEPSRCNFSACAVGNRLVLFGGEGVNMQPMDDTFVLNLESAKPEWRRVKVSASPPGRWGHTLSWLNGSWLVVFGGCGQQGLLNDVFVL
DLDAKQPTWREVASEGPPLPRSWHSSCTLDGSKLVVSGGCTESGVLLSDTFLLDLTKEKPAWKEIPTSWSPPSRLGHTLSVFGKTKLFMFGGLAKSGSLR
LRSCDAYTMDAGEDSPQWRQLATTGFPSIGPPPRLDHVAVSLPCGRIIIFGGSIAGLHSPSQLFLLDPAEEKPTWRILNVPGQPPKFAWGHSTCVVGGTR
VLVLGGHTGEEWILNELHELCLASRPDEDE

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Biological Process
GO Term signal transduction
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term response to abiotic stimulus
6
GO Category Biological Process
GO Term protein modification process
7
GO Category Biological Process
GO Term flower development
8
GO Category Molecular Function
GO Term catalytic activity
9
GO Category Biological Process
GO Term protein metabolic process
10
GO Category Biological Process
GO Term catabolic process
11
GO Category Biological Process
GO Term cellular process
12
GO Category Molecular Function
GO Term protein binding
13
GO Category Molecular Function
GO Term signal transducer activity
Presence of Splice variants YES