LOC_Os11g34270

Expression Profile

RGAP LOCUS ID LOC_Os11g34270
RAP-DB ID Os11g0545300
Function ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 3

2) CELLO Prediction
localization Nuclear
score 1.998

3) NUCPRED Prediction
localization Non Nuclear
score 0.11

4) Y-Loc Prediction
localization Cytoplasm
score 67
confidence value 0.19
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSpo11-5
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.118
NLS score -0.47
Protein Sequence >LOC_Os11g34270.1 protein
MFGGKFRRSKVCSKCGMLSNSEEDFTLLMFNIPHREQVVAATLEDCLDHIVEENVHDSLSRCESCMNDQKSTSKCTFHETRDVVIVLQRFEPLTLGGYRK
IGELINFPTELDISPYMSGVVTDKHIYELFGIIVHEGGVIGGHYRSYVKTNCWYEVSDRDVKRVNENFVLGAQAYILFYNRKEEAKSFDEVLAFAATAMS
SSDAVPTSTSKDYTERTLSPEVSSAALSCWIDAARVLEPKSYSDQDILEKYIICMDRDSSDVSERIRNAMRNCNESRQEYHFNLPTTDGPFYDDNLGQYC
LLRGARFRTISTSSNVEAKRDRAVRMHFLLSEILKLLQLKKVIDVGAIGYLEKFKFGNYSRSALLRRINDACMLLGTNRLSLNISVMSRGSIIGPVLFKV
GEDVMIDASLRAVQIPHDIHLVDHIKLKKPVSFVLVVEKLSIFNMLVNLNFHVTHNCIIITGCGKPDMATRGAVFKLNYCLPVKVYILADLDLDGLQIYL

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Biological Process
GO Term protein metabolic process
3
GO Category Biological Process
GO Term catabolic process
4
GO Category Biological Process
GO Term cellular process
5
GO Category Molecular Function
GO Term hydrolase activity
Presence of Splice variants No