LOC_Os11g34210

Expression Profile

RGAP LOCUS ID LOC_Os11g34210
RAP-DB ID Os11g0544800
Function aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 10.5

2) CELLO Prediction
localization Cytoplasmic
score 1.507

3) NUCPRED Prediction
localization Non Nuclear
score 0.44

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.67
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGatB
Function assigned as per literature OsGATB is required for primary root development in rice
Subcellular localization as per literature Mitochondria
Cells used for localization experiment onion epidermal cells.
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27200067
Reference of localization https://www.frontiersin.org/articles/10.3389/fpls.2016.00599/full
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.118
NLS score 0.27
Protein Sequence >LOC_Os11g34210.2 protein
MALTLLRGMRTPVVARRNAGLFFTTLQSPLLSRFTMRAESARAAAPKSIQLATKEAAEQKAQGFEAVIGIETHVQLSTVTKAFCSCPYSYGSQPNSTVCP
TCMGHPGTLPVLNAKVVECAVRLGLALNCEIAMTSKFDRKQYFYPDLPKGYQISQFDIPIAKEGYLDLDLPVEFGGGHRRFGVTRVHMEEDAGKLLHSES
GSYSQVDLNRAGVPLLEIVSEPDMRTGIEAAEYGAELQRLVRYLGVSNGNMQEGSLRCDVNVSVRPIGQSNFGTKVEIKNMNSFSAISRAIDYEISRQIL
LHKEGQADQIVQETRLWDESSQKTFTMRKKEGLADYRYFPEPDLPEVVLTSEYIDEIQNSMPELPEAKRRRFENMGLSMQDVLFLANDDNVARFFDSTLE
HGADAKLAANWIMGDIAAYLKNEKLSIDEIKLTPLELSELIASIRNGTISGKIGKEILIELIAKGGTVKSVIEEKDLVQIADPAAIEAMVDQVLADNPKQ
LEQYRSGKTKLQGFFAGQVMKASKGKANPVLLNKILGEKLKANS

GO Analysis
1
GO Category Molecular Function
GO Term catalytic activity
2
GO Category Biological Process
GO Term translation
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES