LOC_Os11g32900

Expression Profile

RGAP LOCUS ID LOC_Os11g32900
RAP-DB ID Os11g0533500
Function retinoblastoma-related protein-like, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 4.5

2) CELLO Prediction
localization Nuclear
score 2.315

3) NUCPRED Prediction
localization Non Nuclear
score 0.62

4) Y-Loc Prediction
localization Nuclear
score 97
confidence value 0.49
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category RB

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRBR2
Function assigned as per literature  OsRBR2 function with OsMSI1 in reproductive development in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 31548267
Reference of localization http://www.plantphysiol.org/content/plantphysiol/181/4/1600.full.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.115
NLS score -0.22
Protein Sequence >LOC_Os11g32900.1 protein
MASQPPAAVEARLADLCKELGVDEGVAGEAAAVLEEGKGALLASPSFGSKSPEDAEKLCFAFVLYCVSKLKETKAGSSGVRLWEILKGCKLKYDDFFKES
QRLASRIDQVLGSRYGSDWEARLELKQLENLVNLLADASRFYCKAFNELFLSPSTDQEPGSTTNIPDYIRFGWLLFLILRSKSPELFKDLVSCIHGLVAI
LAILLIHVPAKFRSFTIEGSSHLIKQTEKGVDLLPSLCHNYHTSEDRLKEMMGKSYKVIEVFFSRKAINASEFKTVNLDKIDTDGLMYFKDLVDDEIFQS
NLEKLEKLSSTTGCQGELDLEMFLTSNDYVLNAENSSGSSANFGCSKRVFETLASPTKTIKNMLAAPSSPSSPANGGSIKIVQMTPVTSAMTTAKWLRDV
ISSLPDKPSSKLEEFLSSCDTDLTSDVVKRVSIILEAIFPTKSIDRGTSIGLNCANAFDIPWAEARKMEASKLYYRVLEAICRAESQNNNVNNLTPLLSN
ERFHRCLIACSAELVLATHKTVIMMFPAVLESTGLTAFDLSKIIENFVRHEETLPRELKRHLNSLEEQLLESMSWEKGSSLYNSLVVARPSLSTEINSLG
LLAEPMPSLDGIVARQSIHPDGLPPTPSKRWPSAGPDGNCYPQSPKRLCTESRNSLVERNSQTPPPKQSQTGLSILKAKYHPLQATFASPTVSNPVSGNE
KCAVVGVQIFFSKILKLAAIRIRNLCERLRHEELTVSVYNIFKQILDQQTALFFNRHVDQIILCCLYGVAKVSQLSLTFKEIVNNYKREPQCKPEVFRSI
FVGSTNRNGGFGSRHVDIIVFYNQVFVPTVKPLLVALMPSSTRPEDKRNTNSQIPGSPKSSPFSNLPDMSPKKVSSSHNVYVSPLRQTKMDALLSPSSRS
FYACIGESTQAFQSPSKDLAAINSRLNYPTRRINTRINFDMVSDSVVAGSLGQPNGGSASSDPAAAFSPLSKKSKTDS

GO Analysis
1
GO Category Biological Process
GO Term DNA metabolic process
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term cell cycle
4
GO Category Biological Process
GO Term cell differentiation
5
GO Category Biological Process
GO Term multicellular organismal development
6
GO Category Biological Process
GO Term regulation of gene expression, epigenetic
7
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
8
GO Category Biological Process
GO Term reproduction
9
GO Category Molecular Function
GO Term protein binding
10
GO Category Cellular comBiological Processonent
GO Term cytosol
11
GO Category Biological Process
GO Term post-embryonic development
12
GO Category Biological Process
GO Term cellular component organization
13
GO Category Biological Process
GO Term cell growth
14
GO Category Biological Process
GO Term cellular process
15
GO Category Biological Process
GO Term anatomical structure morphogenesis
Presence of Splice variants YES